The truth is often terrifying which I think is one of the motifs of Larry and Andrew's cinema. The cost of knowledge is an important theme. In the second and third films they explore the consequences of Neo's choice to know the truth. It's a beautiful beautiful story.
There is no arguing with the pretenders to a divine knowledge and to a divine mission. They are possessed with the sin of pride they have yielded to the perennial temptation.
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But now with the living conditions deteriorating and with the sure knowledge that we are slated for destruction we have been transformed into an implacable army of liberation.